European Journal of Chemistry

Synthesis, crystal structure, Hirshfeld analysis and computational studies of a novel cadmium(II) complex derived from 2-benzoylpyridine-N4-ethyl thiosemicarbazone

Crossmark


Main Article Content

Alan Mankottil Johnson
Nisha Kuttappan
Kannan Vellayan

Abstract

A novel sulfur-bridged box dimer cadmium complex, [Cd2(bzpyetsc)2(Cl)2], of 2-benzoylpyridine-N4-ethyl thiosemicarbazone [Hbzpyetsc] ligand prepared and characterized by various physicochemical methods, single crystal X-ray diffraction studies and spectroscopic methods. Single crystal X-ray diffraction studies showed that the prepared complex has a distorted square pyramid coordination around cadmium(II) and the compound crystallized in the monoclinic space group C2/c. The intermolecular hydrogen bonding and weak interaction provide a 2-dimensional laminar structure for the complex. The infrared spectra of the complex revealed that the thiosemicarbazone ligand coordinates to the metal center in its deprotonated thiolate form through the pyridine nitrogen, azomethine nitrogen and thione sulfur atoms. The electronic spectral data showed that the bands assigned to the azomethine bond in the ligand are slightly shifted upon complexation. Furthermore, the complex was optimized and evaluated computationally using the density functional theorem. The HOMO-LUMO analysis revealed that the energy gap is 1.876 eV. Theoretical investigations of the prepared complex are performed by Frontier molecular orbital and molecular electrostatic potential analysis to understand the electron distribution. From the MEP study, it was found that the electron density is predominantly localized around chlorine atoms. Hirshfeld analysis proved that the H-H interaction is the most notable intermolecular interaction.


icon graph This Abstract was viewed 7 times | icon graph Article PDF downloaded 4 times icon graph Article CIF FILE downloaded 0 times

How to Cite
(1)
Johnson, A. M.; Kuttappan, N.; Vellayan, K. Synthesis, Crystal Structure, Hirshfeld Analysis and Computational Studies of a Novel cadmium(II) Complex Derived from 2-Benzoylpyridine-N4-Ethyl Thiosemicarbazone. Eur. J. Chem. 2026, 17, 79-88.

Article Details

Share
Crossref - Scopus - Google - European PMC
References

[1]. Nozha, S. G.; Morgan, S. M.; Ahmed, S. E. A.; El-Mogazy, M. A.; Diab, M. A.; El-Sonbati, A. Z.; Abou-Dobara, M. I. Polymer complexes. LXXIV. Synthesis, characterization and antimicrobial activity studies of polymer complexes of some transition metals with bis-bidentate Schiff base. J. Mol. Struct. 2021, 1227, 129525.
https://doi.org/10.1016/j.molstruc.2020.129525

[2]. Morgan, S.; El-Sonbati, A.; Eissa, H. Geometrical structures, thermal properties and spectroscopic studies of Schiff base complexes: Correlation between ionic radius of metal complexes and DNA binding. J. Mol. Liquids 2017, 240, 752-776.
https://doi.org/10.1016/j.molliq.2017.05.114

[3]. Morrow, H. Cadmium and Cadmium Alloys. Kirk-Othmer. Encyclopedia of Chemical Technology 2010, 1-36.
https://doi.org/10.1002/0471238961.0301041303011818.a01.pub3

[4]. Abyar, S.; Khandar, A. A.; Salehi, R.; Abolfazl Hosseini-Yazdi, S.; Alizadeh, E.; Mahkam, M.; Jamalpoor, A.; White, J. M.; Shojaei, M.; Aizpurua-Olaizola, O.; Masereeuw, R.; Janssen, M. J. In vitro nephrotoxicity and anticancer potency of newly synthesized cadmium complexes. Sci. Rep. 2019, 9 (1), 14686 https://doi.org/10.1038/s41598-019-51109-9.
https://doi.org/10.1038/s41598-019-51109-9

[5]. Gupta, V. K.; Sharma, N.; Sharma, A.; Teraiya, S. B.; Parmar, N. J.; Sharma, D. Crystallographic and Hirshfeld surface analysis of 10-(4-chlorophenyldiazenyl)-3-(3-chlorophenyl)-1-methyl-3,5a,6,11b-tetrahydro-5H-benzopyrano[4',3'-4,5]pyrano[2,3-c]pyrazole. Eur. J. Chem. 2025, 16 (3), 311-318.
https://doi.org/10.5155/eurjchem.16.3.311-318.2668

[6]. Xu, J.; Wang, X.; Zhang, X.; Zhang, Y.; Yang, Z.; Li, S.; Tao, L.; Wang, Q.; Wang, T. Room-temperature self-healing supramolecular polyurethanes based on the synergistic strengthening of biomimetic hierarchical hydrogen-bonding interactions and coordination bonds. Chemical Engineering Journal 2023, 451, 138673.
https://doi.org/10.1016/j.cej.2022.138673

[7]. Dong, W.; Akogun, S. F.; Zhang, Y.; Sun, Y.; Dong, X. A reversible "turn-on" fluorescent sensor for selective detection of Zn2+. Sensors and Actuators B: Chemical 2017, 238, 723-734.
https://doi.org/10.1016/j.snb.2016.07.047

[8]. Kumaravel, G.; Ponya Utthra, P.; Raman, N. Exploiting the biological efficacy of benzimidazole based Schiff base complexes with l-Histidine as a co-ligand: Combined molecular docking, DNA interaction, antimicrobial and cytotoxic studies. Bioorg. Chem. 2018, 77, 269-279.
https://doi.org/10.1016/j.bioorg.2018.01.024

[9]. Mautner, F. A.; Fischer, R. C.; Reichmann, K.; Gullett, E.; Ashkar, K.; Massoud, S. S. Synthesis and characterization of 1D and 2D cadmium(II)-2,2′-bipyridine-N,N′-dioxide coordination polymers bridged by pseudohalides. J. Mol. Struc. 2019, 1175, 797-803.
https://doi.org/10.1016/j.molstruc.2018.08.022

[10]. Banu, K. S.; Mondal, S.; Guha, A.; Das, S.; Chattopadhyay, T.; Suresh, E.; Zangrando, E.; Das, D. Synthesis, characterization and luminescence properties of polymeric cadmium(II) complexes with imidazole and its derivatives mediated by thiocyanate and dicyanamide anions. Polyhedron 2011, 30 (1), 163-168.
https://doi.org/10.1016/j.poly.2010.10.003

[11]. Banerjee, A.; Maiti, P.; Chattopadhyay, T.; Banu, K. S.; Ghosh, M.; Suresh, E.; Zangrando, E.; Das, D. Syntheses and crystal structures of cadmium(II)X2-hexamethylenetetramine (X=Br−/I−/SCN−) coordination polymers having different dimensionality. Polyhedron 2010, 29 (3), 951-958.
https://doi.org/10.1016/j.poly.2009.11.009

[12]. Saren, D.; Bodensteiner, M.; Manna, S. C. Dinuclear cadmium(II) complexes with distorted octahedral/monocapped trigonal prism coordination geometries: synthesis, crystal structure, DFT/TD-DFT calculation and photocatalytic degradation of methylene blue. Polyhedron 2024, 254, 116936.
https://doi.org/10.1016/j.poly.2024.116936

[13]. Du, M.; Zhao, X. Synthesis, characterization and crystal structures of new MnII, FeII and AgI complexes with an angular dipyridyl ligand 2,5-bis(4-pyridyl)-1,3,4-oxadiazole. J. Mol. Struc. 2004, 694 (1-3), 235-240.
https://doi.org/10.1016/j.molstruc.2004.03.042

[14]. Rhoufal, F.; Bentiss, F.; Guesmi, S.; Ketatni, E. M.; Saadi, M.; El Ammari, L. Crystal structure, spectroscopic characterization and Hirshfeld surface analysis of trans-diaqua[2,5-bis(pyridin-4-yl)-1,3,4-oxadiazole]dithiocyanatonickel(II). Acta Crystallogr. E Cryst. Commun. 2019, 75 (7), 1046-1050.
https://doi.org/10.1107/S2056989019008727

[15]. Arshad, T.; Khan, K. M.; Rasool, N.; Salar, U.; Hussain, S.; Asghar, H.; Ashraf, M.; Wadood, A.; Riaz, M.; Perveen, S.; Taha, M.; Ismail, N. H. 5-Bromo-2-aryl benzimidazole derivatives as non-cytotoxic potential dual inhibitors of α -glucosidase and urease enzymes. Bioorg. Chem. 2017, 72, 21-31.
https://doi.org/10.1016/j.bioorg.2017.03.007

[16]. Nisha, K. Transition Metal Complexes of ONS and NNS Donor Thiosemicarbazones: Crystal Structures and Spectral Studies. Ph.D. Thesis, Cochin University of Science and Technology (CUSAT), Kochi, India, 2016.

[17]. Bruker (2008). SMART, SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.

[18]. Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany.

[19]. Sheldrick, G. M. A short history ofSHELX. Acta Crystallogr. A. Found Crystallogr. 2007, 64 (1), 112-122.
https://doi.org/10.1107/S0108767307043930

[20]. Sheldrick, G. M. SHELXS-97 and SHELXL-97 Program for Crystal Structure Solution and Refinement. University of Gottingen, Germany, Germany, 1997.

[21]. Brandenburg, K. (1999). DIAMOND. Crystal Impact GbR, Bonn, Germany.

[22]. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Gaussian, Inc., Wallingford CT, 2004.

[23]. Yang, Y.; Weaver, M. N.; Merz, K. M. Assessment of the "6-31+G** + LANL2DZ" Mixed Basis Set Coupled with Density Functional Theory Methods and the Effective Core Potential: Prediction of Heats of Formation and Ionization Potentials for First-Row-Transition-Metal Complexes. J. Phys. Chem. A. 2009, 113 (36), 9843-9851.
https://doi.org/10.1021/jp807643p

[24]. Padmaja, L.; Ravikumar, C.; Sajan, D.; Hubert Joe, I.; Jayakumar, V. S.; Pettit, G. R.; Faurskov Nielsen, O. Density functional study on the structural conformations and intramolecular charge transfer from the vibrational spectra of the anticancer drug combretastatin‐A2. J. Raman Spectroscopy 2008, 40 (4), 419-428.
https://doi.org/10.1002/jrs.2145

[25]. Poiyamozhi, A.; Sundaraganesan, N.; Karabacak, M.; Tanrıverdi, O.; Kurt, M. The spectroscopic (FTIR, FT-Raman, UV and NMR), first-order hyperpolarizability and HOMO-LUMO analysis of 4-amino-5-chloro-2-methoxybenzoic acid. Journal. of. Molecular. Structure. 2012, 1024, 1-12.
https://doi.org/10.1016/j.molstruc.2012.05.008

[26]. Suresh, C. H.; Remya, G. S.; Anjalikrishna, P. K. Molecular electrostatic potential analysis: A powerful tool to interpret and predict chemical reactivity. WIREs. Comput. Mol. Sci. 2022, 12 (5), e1601 https://doi.org/10.1002/wcms.1601.
https://doi.org/10.1002/wcms.1601

[27]. Fuentealba, P.; Florez, E.; Tiznado, W. Topological Analysis of the Fukui Function. J. Chem. Theory. Comput. 2010, 6 (5), 1470-1478.
https://doi.org/10.1021/ct100022w

[28]. López-Torres, E.; Mendiola, M. A.; Pastor, C. J.; Pérez, B. S. Versatile Chelating Behavior of Benzil Bis(thiosemicarbazone) in Zinc, Cadmium, and Nickel Complexes. Inorg. Chem. 2004, 43 (17), 5222-5230.
https://doi.org/10.1021/ic035461a

[29]. Yadav, P. N.; Mahiya, K.; Tharu, K. B.; Punniyamoorthy, S.; Shrestha, A.; Bhattarai, N. P.; Pokharel, Y. R. N(3)-substituted thiophene-2-carboxaldehyde thiosemicarbazones compounds and their copper(II) complexes: Synthesis, characterization, in silico study and anticancer activity. Polyhedron 2026, 289, 118022.
https://doi.org/10.1016/j.poly.2026.118022

[30]. Spackman, P. R.; Turner, M. J.; McKinnon, J. J.; Wolff, S. K.; Grimwood, D. J.; Jayatilaka, D.; Spackman, M. A. CrystalExplorer: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals. J. Appl. Crystallogr. 2021, 54 (3), 1006-1011.
https://doi.org/10.1107/S1600576721002910

[31]. Al-Wahaibi, L. H.; Joubert, J.; Blacque, O.; Al-Shaalan, N. H.; El-Emam, A. A. Crystal structure, Hirshfeld surface analysis and DFT studies of 5-(adamantan-1-yl)-3-[(4-chlorobenzyl)sulfanyl]-4-methyl-4H-1,2,4-triazole, a potential 11β-HSD1 inhibitor. Sci. Rep. 2019, 9 (1), 19745 https://doi.org/10.1038/s41598-019-56331-z.
https://doi.org/10.1038/s41598-019-56331-z

[32]. Spackman, M. A.; Jayatilaka, D. Hirshfeld surface analysis. CrystEngComm 2009, 11 (1), 19-32.
https://doi.org/10.1039/B818330A

[33]. Odame, F.; Madanhire, T.; Hosten, E. C. Crystal Structure and Hirshfeld Surface Analysis of 3-(pyrrolidine-1-carbonyl)-2H-Chromen-2-One. J. Struct. Chem. 2024, 65 (7), 1305-1316.
https://doi.org/10.1134/S0022476624070035

[34]. Odame, F.; Madanhire, T.; Hosten, E. C.; Lobb, K. Crystal Structure, Hirshfeld Surface Analysis and Computational Studies of Two Benzo[b][1,4]Diazepine Derivatives. J. Struct. Chem. 2023, 64 (12), 2326-2342.
https://doi.org/10.1134/S0022476623120041

[35]. Tsering, D.; Dey, P.; Kapoor, K. K.; Seth, S. K. An Energetic and Topological Approach to Understanding the Interplay of Noncovalent Interactions in a Series of Crystalline Spiropyrrolizine Compounds. ACS. Omega 2024, 36242-36258 https://doi.org/10.1021/acsomega.4c02511.
https://doi.org/10.1021/acsomega.4c02511

[36]. Gumus, I.; Solmaz, U.; Binzet, G.; Keskin, E.; Arslan, B.; Arslan, H. Hirshfeld surface analyses and crystal structures of supramolecular self-assembly thiourea derivatives directed by non-covalent interactions. J. Mol. Struc. 2018, 1157, 78-88.
https://doi.org/10.1016/j.molstruc.2017.12.017

[37]. Al-Jibori, S. A.; Al-Jibori, G. H.; Ashfaq, M.; Khalil, T.; Laguna, M.; Wagner, C.; Tahir, M. N.; Al-Janabi, A. S. Synthesis, characterization, crystal structure, Hirshfeld surface analysis of Cd(II)-1, 2-benzisothiazol-3(2H)-one complexes. J. Mol. Struc. 2023, 1289, 135803.
https://doi.org/10.1016/j.molstruc.2023.135803

[38]. Akbari, Z.; Montazerozohori, M.; Hoseini, S. J.; Naghiha, R.; Hayati, P.; Bruno, G.; Santoro, A.; White, J. M. Synthesis, crystal structure, Hirshfeld surface analyses, antimicrobial activity, and thermal behavior of some novel nanostructure hexa‐coordinated Cd(II) complexes: Precursors for CdO nanostructure. Applied. Organom. Chem. 2021, 35 (5), e6181 https://doi.org/10.1002/aoc.6181.
https://doi.org/10.1002/aoc.6181

[39]. Koopmans, T. Über die Zuordnung von Wellenfunktionen und Eigenwerten zu den Einzelnen Elektronen Eines Atoms. Physica 1934, 1, 104-113.
https://doi.org/10.1016/S0031-8914(34)90011-2

[40]. Johnson, A. M.; V, K.; K., N. A theoretical studies on the energetic properties of triazole-benzene and triazole-pyridine derivatives. J. Mol. Model. 2025, 31 (9), 261 https://doi.org/10.1007/s00894-025-06484-8.
https://doi.org/10.1007/s00894-025-06484-8

[41]. Qi, L.; Yu, J.; Jaroniec, M. Preparation and enhanced visible-light photocatalytic H2-production activity of CdS-sensitized Pt/TiO2 nanosheets with exposed (001) facets. Phys. Chem. Chem. Phys. 2011, 13 (19), 8915.
https://doi.org/10.1039/c1cp20079h

[42]. Politzer, P.; Laurence, P. R.; Jayasuriya, K. Molecular electrostatic potentials: an effective tool for the elucidation of biochemical phenomena. Environ. Health Perspect. 1985, 61, 191-202.
https://doi.org/10.1289/ehp.8561191

[43]. El-Gammal, O.; Rakha, T.; Metwally, H.; Abu El-Reash, G. Synthesis, characterization, DFT and biological studies of isatinpicolinohydrazone and its Zn(II), Cd(II) and Hg(II) complexes. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 2014, 127, 144-156.
https://doi.org/10.1016/j.saa.2014.02.008

[44]. Mchiri, C.; Nasri, H.; Frochot, C.; Acherar, S. Distorted five-coordinate square pyramidal geometry of a cadmium(II) complex containing a 2-methylimidazole ligand: Crystal structure and axial ligand effect on spectroscopic properties. Polyhedron 2019, 173, 114107.
https://doi.org/10.1016/j.poly.2019.114107

[45]. Bencini, A.; Bianchi, A.; Del Piero, S.; Giorgi, C.; Melchior, A.; Portanova, R.; Tolazzi, M.; Valtancoli, B. Coordination Features of a Polyaza-Bipyridine-Macrocyclic Ligand toward Co(II) and Cd(II) in Water and Dimethylsulfoxide. J. Solution. Chem. 2008, 37 (4), 503-517.
https://doi.org/10.1007/s10953-008-9249-3

Supporting Agencies

Government College Kattappana, Kerala-685508, India.
Most read articles by the same author(s)
TrendMD

Dimensions - Altmetric - scite_ - PlumX

Downloads and views

Downloads

Download data is not yet available.

Metrics

Metrics Loading ...
License Terms
Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

License Terms

by-nc

Copyright © 2026 by Authors. This work is published and licensed by Atlanta Publishing House LLC, Atlanta, GA, USA. The full terms of this license are available at https://www.eurjchem.com/index.php/eurjchem/terms and incorporate the Creative Commons Attribution-Non Commercial (CC BY NC) (International, v4.0) License (http://creativecommons.org/licenses/by-nc/4.0). By accessing the work, you hereby accept the Terms. This is an open access article distributed under the terms and conditions of the CC BY NC License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited without any further permission from Atlanta Publishing House LLC (European Journal of Chemistry). No use, distribution, or reproduction is permitted which does not comply with these terms. Permissions for commercial use of this work beyond the scope of the License (https://www.eurjchem.com/index.php/eurjchem/terms) are administered by Atlanta Publishing House LLC (European Journal of Chemistry).