European Journal of Chemistry

Crystal structure and supramolecular assembly of a hydrogen-bonded cocrystal of 2-fluoro-N-(pyrrolidine-1-carbonothioyl)benzamide and 1,3,5-triazinane-2,4,6-trithione

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Ahmad Yahaya
Ummuhan Solmaz
Hakan Arslan

Abstract

An unexpected 1:1 cocrystal of 2-fluoro-N-(pyrrolidine-1-carbonothioyl)benzamide and 1,3,5-triazinane-2,4,6-trithione (trithiocyanuric acid, TTCA) was isolated during an attempted synthesis of the single-component benzoylthiourea derivative and characterized by single-crystal X-ray diffraction. The compound crystallizes in the triclinic space group P-1 with one molecule of each component in the asymmetric unit. The fluorinated benzamide derivative adopts a non-planar conformation in which the carbonyl-bearing fragment is twisted relative to the aromatic ring, while the pyrrolidine ring is puckered. The trithione component is nearly planar and displays narrow ranges of C-S and C-N distances, consistent with delocalization within the heterocyclic framework. A nearly linear N3-H3···O1 hydrogen bond [N···O = 2.932(3) Å, N-H···O = 171(3)°] forms a heteromolecular associate. Further N-H···S contacts connect symmetry-related components, producing an extended hydrogen-bonded arrangement supplemented by weaker C-H···S and C-H···F contacts. The crystal packing is governed by cooperative N-H···O and N-H···S interactions.


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Yahaya, A.; Solmaz, U.; Arslan, H. Crystal Structure and Supramolecular Assembly of a Hydrogen-Bonded Cocrystal of 2-Fluoro-N-(pyrrolidine-1-carbonothioyl)benzamide and 1,3,5-Triazinane-2,4,6-Trithione. Eur. J. Chem. 2026, 17, 268-279.

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References

[1]. Zahra, U.; Saeed, A.; Abdul Fattah, T.; Flörke, U.; Erben, M. F. Recent trends in chemistry, structure, and various applications of 1-acyl-3-substituted thioureas: a detailed review. RSC Adv. 2022, 12, 12710-12745.
https://doi.org/10.1039/D2RA01781D

[2]. Saeed, A.; Mustafa, M. N.; Zain-ul-Abideen, M.; Shabir, G.; Erben, M. F.; Flörke, U. Current developments in chemistry, coordination, structure and biological aspects of 1-(acyl/aroyl)-3-(substituted)thioureas. J. Sulfur Chem. 2019, 40, 312-350.
https://doi.org/10.1080/17415993.2018.1551488

[3]. Saeed, A.; Flörke, U.; Erben, M. F. A review on the chemistry, coordination, structure and biological properties of 1-(acyl/aroyl)-3-(substituted)thioureas. J. Sulfur Chem. 2014, 35, 318-355.
https://doi.org/10.1080/17415993.2013.834904

[4]. Ullah, S. A.; Saeed, A.; Azeem, M.; Haider, M. B.; Erben, M. F. Exploring the latest trends in chemistry, structure, coordination, and diverse applications of 1-acyl-3-substituted thioureas. RSC Adv. 2024, 14, 18011-18063.
https://doi.org/10.1039/D4RA02567A

[5]. Gumus, I.; Solmaz, U.; Binzet, G.; Keskin, E.; Arslan, B.; Arslan, H. Supramolecular self-assembly of new thiourea derivatives directed by intermolecular hydrogen bonds and weak interactions. Res. Chem. Intermed. 2019, 45, 169-198.
https://doi.org/10.1007/s11164-018-3596-5

[6]. Ozer, C. K.; Solmaz, U.; Arslan, H. Crystal structure, Hirshfeld surface analysis, and DFT studies of N-(2-chlorophenylcarbamothioyl)cyclohexanecarboxamide. Eur. J. Chem. 2021, 12, 439-449.
https://doi.org/10.5155/eurjchem.12.4.439-449.2196

[7]. Joha, T.; Solmaz, U.; Dogen, A.; Arslan, H. Fluoro-substituted benzoylthiourea derivatives: synthesis, structural characterization, and evaluation of antioxidant and antimicrobial activities. J. Mol. Struct. 2026, 1356, 145070.
https://doi.org/10.1016/j.molstruc.2025.145070

[8]. Oztaslar, A.; Arslan, H. N-((2-acetylphenyl)carbamothioyl)benzamide: synthesis, crystal structure analysis, and theoretical studies. Karbala Int. J. Mod. Sci. 2023, 9(3), 377-397.
https://doi.org/10.33640/2405-609X.3304

[9]. Wzgarda-Raj, K.; Rybarczyk-Pirek, A. J.; Palusiak, M. The N-H···S hydrogen bonding pattern in trithiocyanuric acid in crystalline state: geometric, topological, and energetic analysis of trithiocyanuric acid cocrystals. CrystEngComm 2025, 27, 784-794.
https://doi.org/10.1039/D4CE01153H

[10]. Wzgarda-Raj, K.; Rybarczyk-Pirek, A. J.; Wojtulewski, S.; Palusiak, M. Trithiocyanuric acid: novel cocrystals and analysis of its tautomeric forms. Acta Crystallogr. C 2021, 77, 49-55.
https://doi.org/10.1107/S2053229620016137

[11]. Wzgarda-Raj, K.; Książkiewicz, O.; Palusiak, M. Co-crystal synthesis of 2- and 4-mercaptopyridines with thiourea and its analogue, trithiocyanuric acid. CrystEngComm 2022, 24, 5340-5347.
https://doi.org/10.1039/D2CE00592A

[12]. Nagarajan, V.; Pedireddi, V. R. Preparation of multiple cocrystals of trithiocyanuric acid with some N-donor compounds. Cryst. Growth Des. 2014, 14, 4803-4810.
https://doi.org/10.1021/cg500961n

[13]. Aziz, H.; Saeed, A.; Simpson, J.; Shabir, G.; Hökelek, T.; Khan, I. U.; Jabeen, E. Synthesis, single crystal X-ray structure determination, Hirshfeld surface analysis, crystal voids studies, and density functional theory calculations of N-carbamothioylbenzamide and 1,3,5-triazinane-2,4,6-trithione co-crystal. Struct. Chem. 2024, 35, 305-319.
https://doi.org/10.1007/s11224-023-02171-7

[14]. Martin, D.; Bauer, M.; Pankratov, V. A. Cyclotrimerisation of cyano-compounds into 1,3,5-triazines. Russ. Chem. Rev. 1978, 47, 975-990.
https://doi.org/10.1070/RC1978v047n10ABEH002288

[15]. Ahn, S.; PrakashaReddy, J.; Kariuki, B. M.; Chatterjee, S.; Ranganathan, A.; Pedireddi, V. R.; Rao, C. N. R.; Harris, K. D. M. Structural rationalisation of co-crystals formed between trithiocyanuric acid and molecules containing hydrogen-bonding functionality. Chem. Eur. J. 2005, 11, 2433-2439.
https://doi.org/10.1002/chem.200400340

[16]. Douglass, I. B.; Dains, F. B. The preparation and hydrolysis of mono- and disubstituted benzoylthioureas. J. Am. Chem. Soc. 1934, 56, 1408-1409.
https://doi.org/10.1021/ja01321a061

[17]. Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H. OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 2009, 42, 339-341.
https://doi.org/10.1107/S0021889808042726

[18]. Sheldrick, G. M. SHELXT - Integrated space-group and crystal-structure determination. Acta Crystallogr. A 2015, 71, 3-8.
https://doi.org/10.1107/S2053273314026370

[19]. Sheldrick, G. M. Crystal structure refinement with SHELXL. Acta Crystallogr. C 2015, 71, 3-8.
https://doi.org/10.1107/S2053229614024218

[20]. Spackman, M. A.; Jayatilaka, D. Hirshfeld surface analysis. CrystEngComm 2009, 11, 19-32.
https://doi.org/10.1039/B818330A

[21]. Mackenzie, C. F.; Spackman, P. R.; Jayatilaka, D.; Spackman, M. A. CrystalExplorer model energies and energy frameworks: extension to metal coordination compounds, organic salts, solvates and open-shell systems. IUCrJ 2017, 4, 575-587.
https://doi.org/10.1107/S205225251700848X

[22]. Jelsch, C.; Ejsmont, K.; Huder, L. The enrichment ratio of atomic contacts in crystals, an indicator derived from the Hirshfeld surface analysis. IUCrJ 2014, 1, 119-128.
https://doi.org/10.1107/S2052252514003327

[23]. Saeed, A.; Khurshid, A.; Bolte, M.; Fantoni, A. C.; Erben, M. F. Intra- and intermolecular hydrogen bonding and conformation in 1-acyl thioureas: an experimental and theoretical approach on 1-(2-chlorobenzoyl)thiourea. Spectrochim. Acta A Mol. Biomol. Spectrosc. 2015, 143, 59-66.
https://doi.org/10.1016/j.saa.2015.02.042

[24]. Bavisotto, R.; Olson, D.; Tysoe, W. T. Correlating structure, self-assembly chemistry and conductivity of trithiocyanuric acid on Au(111). Surf. Sci. 2024, 749, 122556.
https://doi.org/10.1016/j.susc.2024.122556

[25]. Tu, X.-C.; Wu, Z.; Geng, X.; Qu, L.-L.; Sun, H.-M.; Lai, C.; Li, D.-S.; Zhang, S. Oligomerized imide and thioimide organic cathode materials via a H-transfer mechanism for high capacity lithium ion batteries. J. Mater. Chem. A 2021, 9, 18306-18312.
https://doi.org/10.1039/D1TA05405H

[26]. Drożdżewski, P.; Malik, M.; Kopel, P.; Bieńko, D. C. Normal vibrations and vibrational spectra of trithiocyanuric acid in its natural, deuterated, anionic and metal coordinated forms. Polyhedron 2022, 220, 115819.
https://doi.org/10.1016/j.poly.2022.115819

[27]. Khairul, W. M.; Wahab, F. F. A.; Soh, S. K. C.; Shamsuddin, M.; Daud, A. I. Palladium(II)-pivaloyl thiourea complexes: Synthesis, characterisation and their catalytic activity in mild Sonogashira cross-coupling reaction. Chem. Phys. Lett. 2020, 756, 137842.
https://doi.org/10.1016/j.cplett.2020.137842

[28]. Du, W.; Shi, H.; Zhang, H.; Zhao, J.; Yang, H.; Yang, P. Controlled asymmetric aggregation advances n → π* electronic transition and charge separation for enhanced photocatalytic hydrogen synthesis. J. Catal. 2024, 432, 115453.
https://doi.org/10.1016/j.jcat.2024.115453

[29]. Ritchie, R. K.; Spedding, H. A spectroscopic study of thiourea derivatives-II: UV spectra of alkyl and aryl thioureas. Spectrochim. Acta A 1970, 26, 9-22.
https://doi.org/10.1016/0584-8539(70)80244-6

[30]. Brito, I.; Albanez, J.; Bolte, M. Trithiocyanuric acid: a second triclinic polymorph. Acta Crystallogr. E 2010, 66, o2382-o2383.
https://doi.org/10.1107/S1600536810033234

[31]. Clegg, W.; Davies, J. E.; Elsegood, M. R. J.; Lamb, E.; Longridge, J. J.; Rawson, J. M.; Snaith, R.; Wheatley, A. E. H. The first structural studies on trithiocyanuric acid: the solid state structures of its HMPA adduct and its mono-lithiated HMPA complex. Inorg. Chem. Commun. 1998, 1, 58-60.
https://doi.org/10.1016/S1387-7003(98)00015-X

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The Scientific Research Projects Coordination Unit of Mersin University (Project No: 2026-TP2-5587), Mersin, Türkiye.
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