European Journal of Chemistry 2019, 10(1), 45-51 | doi: https://doi.org/10.5155/eurjchem.10.1.45-51.1795 | Get rights and content

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QSAR and molecular docking studies on 4-quinoline carboxylic acid derivatives as inhibition of vesicular stomatitis virus replication


Tawassl Tajelsir Hassan Hajalsiddig (1,*) orcid , Ahmed Elsadig Mohammed Saeed (2) orcid

(1) Department of Chemistry, Collage of Science, Sudan University of Science and Technology, Khartoum, 407, Sudan
(2) Department of Chemistry, Collage of Science, Sudan University of Science and Technology, Khartoum, 407, Sudan
(*) Corresponding Author

Received: 04 Oct 2018 | Revised: 10 Nov 2018 | Accepted: 12 Nov 2018 | Published: 31 Mar 2019 | Issue Date: March 2019

Abstract


The current study describes the development of in silico models based on quantitative structure-activity relationship (QSAR) analysis has been performed on 4-quinoline carboxylic acid derivatives as inhibition capacity of vesicular stomatitis virus replication in Madin Darby canine kidney epithelial cells. A highly descriptive and predictive QSAR model was obtained through the calculation of alignment-independent descriptors using MOE 2009.10 software. For a training set of 20 compounds, the partial least squares analyses result in a model which displays a squared correlation coefficient (r2) of 0.913. Validation of this model was performed using leave-one-out (q2) of 0.842. This model gives (r2pre) of 0.889 for a test set of five compounds. Docking studies were performed for 25 compounds to investigate the mode of interaction between 4-quinoline carboxylic acid derivatives and the active site of the human dihydroorotate dehydrogenase.


Keywords


PLS; QSAR; Docking study; 4-Quinoline carboxylic acid; Vesicular stomatitis virus; Dihydroorotate dehydrogenase

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DOI: 10.5155/eurjchem.10.1.45-51.1795

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[1]. Ayelen Luczywo, Ismael Pretto Sauter, Thalita Camêlo Silva Ferreira, Mauro Cortez, Gustavo P. Romanelli, Gabriel Sathicq, Silvia E. Asís
Microwave‐assisted synthesis of 2‐styrylquinoline‐4‐carboxylic acid derivatives to improve the toxic effect against Leishmania (Leishmania) amazonensis
Journal of Heterocyclic Chemistry  , , 2021
DOI: 10.1002/jhet.4217
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[2]. Badvel Pallavi, Prachi Sharma, Noorullah Baig, Vimal Kumar Madduluri, Ajay K. Sah, Udit Saumya, Uma S. Dubey, Paritosh Shukla
Quinoline Glycoconjugates as Potentially Anticancer and Anti‐Inflammatory Agents: An Investigation Involving Synthesis, Biological Screening, and Docking
ChemistrySelect  5(31), 9878, 2020
DOI: 10.1002/slct.202002345
/


References


[1]. Hong, S.; Jung, Y.; Park, S.; Paik, S. Virus Genes 2005, 31, 195-201.
https://doi.org/10.1007/s11262-005-1795-9

[2]. Novella, I.; Ball, L.; Wertz, G. J. Virol. 2004, 78, 9837-9841.
https://doi.org/10.1128/JVI.78.18.9837-9841.2004

[3]. Letchworth, G.; Rodriguez, L.; Del Cbarrera, J. Veterinary J. 1999, 157, 239-260.
https://doi.org/10.1053/tvjl.1998.0303

[4]. Johannsdottir, H.; Mancini, R.; Kartenbeck, J.; Amato, L.; Helenius, A. J. Virol 2008, 83, 440-453.
https://doi.org/10.1128/JVI.01864-08

[5]. Ausubel, L.; Meseck, M.; Derecho, I.; Lopez, P.; Knoblauch, C.; Mcmahon, R.; Anderson, J.; Dunphy, N.; Quezada, V.; Khan, R.; Huang, P.; Dang, W.; Luo, M.; Hsu, D.; Woo, S.; Couture, L. Hum. Gene Ther. 2011, 22, 489-497.
https://doi.org/10.1089/hum.2010.159

[6]. Munier-Lehmann, H.; Vidalain, P.; Tangy, F.; Janin, Y. J. Med. Chem. 2013, 56, 3148-3167.
https://doi.org/10.1021/jm301848w

[7]. Arakaki, T.; Buckner, F.; Gillespie, J.; Malmquist, N.; Phillips, M.; Kalyuzhniy, O.; Luft, J.; DeTitta, G.; Verlinde, C.; Van Voorhis, W.; Hol, W.; Merritt, E. Mol. Microbiol. 2008, 68, 37-50.
https://doi.org/10.1111/j.1365-2958.2008.06131.x

[8]. Schroder, M.; Giermann, N.; Zrenner, R. Plant Physiology. 2005, 138, 1926-1938.
https://doi.org/10.1104/pp.105.063693

[9]. Evans, D.; Guy, H. J. Biol. Chem. 2004, 279, 33035-33038
https://doi.org/10.1074/jbc.R400007200

[10]. Ohishi, T.; Inaoka, D. K.; Kita, K.; Kawada, M. Chem. Pharm. Bull. 2018, 66, 239-242.
https://doi.org/10.1248/cpb.c17-00796

[11]. Liu, S.; Neidhardt, E. A.; Grossman, T. H.; Ocain, T.; Clardy, J. Struc. 2000, 8(1), 25-33
https://doi.org/10.1016/S0969-2126(00)00077-0

[12]. Das, P.; Deng, X.; Zhang, L.; Roth, M.; Fontoura, B.; Phillips, M.; De Brabander, J. ACS Med. Chem. Lett. 2013, 4, 517-521.
https://doi.org/10.1021/ml300464h

[13]. Pourbasheer, E.; Vahdani, S.; Aalizadeh, R.; Banaei, A.; Ganjali, M. R. J. Chem. Sci. 2015, 127, 1243-1251.
https://doi.org/10.1007/s12039-015-0893-z

[14]. Xu, X.; Wang, J.; Yao, Q. Bioorg. Med. Chem. Lett. 2015, 25, 241-244.
https://doi.org/10.1016/j.bmcl.2014.11.065

[15]. Sharma, B. K.; Pilania, P.; Singh, P. Eur. J. Chem. 2010, 1(4), 325-334.
https://doi.org/10.5155/eurjchem.1.4.325-334.195

[16]. Wang, R.; Jiang, J.; Pan, Y.; Cao, H.; Cui, Y. J. Hazard. Mater. 2009, 166, 155-186
https://doi.org/10.1016/j.jhazmat.2008.11.005

[17]. Ahirwar, S.; Agarwal, P.; Patra, P. World J. Pharm. Pharmaceut. Sci. 2015, 3, 671-684.

[18]. Mitra, I.; Saha, A.; Roy, K. Sci. Pharm. 2013, 81(1), 57-80.
https://doi.org/10.3797/scipharm.1208-01

[19]. Arif, M.; Jabeen, F.; Saeed, A.; Qureshi, I. Z.; Mushtaq, N. Bangladesh J. Pharmac. 2017, 12, 319-332.
https://doi.org/10.3329/bjp.v12i3.31428


How to cite


Hajalsiddig, T.; Saeed, A. Eur. J. Chem. 2019, 10(1), 45-51. doi:10.5155/eurjchem.10.1.45-51.1795
Hajalsiddig, T.; Saeed, A. QSAR and molecular docking studies on 4-quinoline carboxylic acid derivatives as inhibition of vesicular stomatitis virus replication. Eur. J. Chem. 2019, 10(1), 45-51. doi:10.5155/eurjchem.10.1.45-51.1795
Hajalsiddig, T., & Saeed, A. (2019). QSAR and molecular docking studies on 4-quinoline carboxylic acid derivatives as inhibition of vesicular stomatitis virus replication. European Journal of Chemistry, 10(1), 45-51. doi:10.5155/eurjchem.10.1.45-51.1795
Hajalsiddig, Tawassl, & Ahmed Elsadig Mohammed Saeed. "QSAR and molecular docking studies on 4-quinoline carboxylic acid derivatives as inhibition of vesicular stomatitis virus replication." European Journal of Chemistry [Online], 10.1 (2019): 45-51. Web. 23 Jan. 2021
Hajalsiddig, Tawassl, AND Saeed, Ahmed. "QSAR and molecular docking studies on 4-quinoline carboxylic acid derivatives as inhibition of vesicular stomatitis virus replication" European Journal of Chemistry [Online], Volume 10 Number 1 (31 March 2019)

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