European Journal of Chemistry

Synthesis, characterization, and DFT study of a Pd(II) Schiff base complex: Exploration of its catalytic efficacy in the Suzuki cross-coupling reaction and its antibacterial activity

Crossmark


Main Article Content

Uttam Kumar Singha
Sudarshan Pradhan
Pritika Gurung
Kingkar Ghosh
Sudeshna Nandi
Tanmoy Dutta
Malay Bhattacharya
Biswajit Sinha

Abstract

A Schiff base ligand (H2L) was synthesized by condensation of 3,3′-methylenedianiline with 2-hydroxy-1-naphthaldehyde under reflux conditions. Subsequently, the corresponding palladium(II) complex was prepared by reacting the ligand with palladium(II) acetate in a 1:1 molar ratio. The structures of both the ligand and its Pd(II) complex were characterized by elemental analysis, NMR, mass spectrometry, UV-vis spectroscopy, and FT-IR spectroscopy. Density functional theory calculations were performed to optimize the molecular structure and evaluate its electronic properties, providing further insight into the stability of the complex. The catalytic performance of the Pd(II) complex was investigated in the Suzuki cross-coupling reaction conducted in an aqueous medium. In addition, the in vitro antibacterial activities of the free ligand and the Pd(II) complex were evaluated against Staphylococcus aureus, Bacillus subtilis, Escherichia coli, and Klebsiella pneumoniae. Molecular docking was used to explore possible protein-complex interaction modes; these calculations were not treated as independent confirmation of the antibacterial results.


icon graph This Abstract was viewed 7 times | icon graph Article PDF downloaded 3 times

How to Cite
(1)
Singha, U. K.; Pradhan, S.; Gurung, P.; Ghosh, K.; Nandi, S.; Dutta, T.; Bhattacharya, M.; Sinha, B. Synthesis, Characterization, and DFT Study of a Pd(II) Schiff Base Complex: Exploration of Its Catalytic Efficacy in the Suzuki Cross-Coupling Reaction and Its Antibacterial Activity. Eur. J. Chem. 2026, 17, 258-267.

Article Details

Share
Crossref - Scopus - Google - European PMC
References

[1]. Aggoun, D.; Messasma, Z.; Bouzerafa, B.; Berenguer, R.; Morallon, E.; Ouennoughi, Y.; Ourari, A. Synthesis, characterization and DFT investigation of new metal complexes of Ni(II), Mn(II) and VO(IV) containing N,O-donor Schiff base ligand. J. Mol. Struct. 2021, 1231, 129923.
https://doi.org/10.1016/j.molstruc.2021.129923

[2]. Chen, L.; Wang, L.; An, W.; Wang, R.; Tian, L. Synthesis, structural characterization, and antibacterial activity of diorganotin complexes of Schiff base derived from 4-(diethylamino)salicylaldehyde and L-tyrosine. Inorg. Nano-Met. Chem. 2020, 50 (9), 872-879.
https://doi.org/10.1080/24701556.2020.1727515

[3]. Naureen, B.; Miana, G.; Shahid, K.; Asghar, M.; Tanveer, S.; Sarwar, A. Iron (III) and zinc (II) monodentate Schiff base metal complexes: Synthesis, characterisation and biological activities. J. Mol. Struct. 2021, 1231, 129946.
https://doi.org/10.1016/j.molstruc.2021.129946

[4]. Muthukkumar, M.; Kamal, C.; Venkatesh, G.; Kaya, C.; Kaya, S.; Enoch, I. V.; Vennila, P.; Rajavel, R. Structural, spectral, DFT and biological studies on macrocyclic mononuclear ruthenium (II) complexes. J. Mol. Struct. 2017, 1147, 502-514.
https://doi.org/10.1016/j.molstruc.2017.06.132

[5]. Muthukkumar, M.; Rajavel, R.; Venkatesh, G.; Vennila, P. Macrocyclic Schiff Base Metal Complexes Derived from Isatin: Structural Activity Relationship and DFT Calculations. Tenside Surfactants Deterg. 2017, 54 (3), 248-259.
https://doi.org/10.3139/113.110496

[6]. Kargar, H.; Ashfaq, M.; Fallah-Mehrjardi, M.; Behjatmanesh-Ardakani, R.; Munawar, K. S.; Tahir, M. N. Synthesis, crystal structure, spectral characterization, theoretical and computational studies of Ni(II), Cu(II) and Zn(II) complexes incorporating Schiff base ligand derived from 4-(diethylamino)salicylaldehyde. Inorg. Chim. Acta 2022, 536, 120878.
https://doi.org/10.1016/j.ica.2022.120878

[7]. Mukherjee, D.; Reja, S.; Sarkar, K.; Fayaz, T.; Kumar, P.; Kejriwal, A.; Das, P.; Sanphui, P.; Kumar Das, R. In vitro cytotoxicity activity of copper complexes of imine and amine ligands: A combined experimental and computational study. Inorg. Chem. Commun. 2022, 146, 110190.
https://doi.org/10.1016/j.inoche.2022.110190

[8]. Kaushik, S.; Paliwal, S. K.; Iyer, M. R.; Patil, V. M. Promising Schiff bases in antiviral drug design and discovery. Med. Chem. Res. 2023, 32 (6), 1063-1076.
https://doi.org/10.1007/s00044-023-03068-0

[9]. Nair, M. S.; Arish, D.; Joseyphus, R. S. Synthesis, characterization, antifungal, antibacterial and DNA cleavage studies of some heterocyclic Schiff base metal complexes. J. Saudi Chem. Soc. 2012, 16 (1), 83-88.
https://doi.org/10.1016/j.jscs.2010.11.002

[10]. Kumar, N.; Kaushal, R.; Awasthi, P. Non-covalent binding studies of transition metal complexes with DNA: A review. J. Mol. Struct. 2023J. Mol. Struct. 2023, 1288, 135751.
https://doi.org/10.1016/j.molstruc.2023.135751

[11]. Boulechfar, C.; Ferkous, H.; Delimi, A.; Djedouani, A.; Kahlouche, A.; Boublia, A.; Darwish, A. S.; Lemaoui, T.; Verma, R.; Benguerba, Y. Schiff bases and their metal Complexes: A review on the history, synthesis, and applications. Inorg. Chem. Commun. 2023, 150, 110451.
https://doi.org/10.1016/j.inoche.2023.110451

[12]. Yusuf, T. L.; Oladipo, S. D.; Zamisa, S.; Kumalo, H. M.; Lawal, I. A.; Lawal, M. M.; Mabuba, N. Design of New Schiff-Base Copper(II) Complexes: Synthesis, Crystal Structures, DFT Study, and Binding Potency toward Cytochrome P450 3A4. ACS Omega 2021, 6 (21), 13704-13718.
https://doi.org/10.1021/acsomega.1c00906

[13]. Kumar, M.; Singh, A. K.; Singh, A. K.; Yadav, R. K.; Singh, S.; Singh, A. P.; Chauhan, A. Recent advances in 3d-block metal complexes with bi, tri, and tetradentate Schiff base ligands derived from salicylaldehyde and its derivatives: Synthesis, characterization and applications. Coord. Chem. Rev. 2023, 488, 215176.
https://doi.org/10.1016/j.ccr.2023.215176

[14]. Singh, A.; Barman, P.; Gogoi, H. P. Thioether-based novel transition metal complexes: Synthesis, DNA interaction, in vitro biological assay, DFT calculations, and molecular docking studies. Bioorg. Chem. 2023, 132, 106343.
https://doi.org/10.1016/j.bioorg.2023.106343

[15]. Gull, P.; Hashmi, A. A. Synthesis, XRD and spectroscopic characterization of pharmacologically active Cu(II) and Zn(II) complexes. J. Mol. Struct. 2017, 1139, 264-268.
https://doi.org/10.1016/j.molstruc.2017.03.053

[16]. Mohamed Asath, R.; Premkumar, R.; Mathavan, T.; Milton Franklin Benial, A. Spectroscopic and molecular docking studies on N , N -di- tert -butoxycarbonyl (Boc)-2-amino pyridine: A potential bioactive agent for lung cancer treatment. J. Mol. Struct. 2017, 1143, 415-423.
https://doi.org/10.1016/j.molstruc.2017.04.117

[17]. Chohan, Z. H.; Munawar, A.; Supuran, C. T. Transition Metal Ion Complexes of Schiff‐bases. Synthesis, Characterization and Antibacterial Properties. Met.-Based Drugs 2000, 8 (3), 137-143.
https://doi.org/10.1155/MBD.2001.137

[18]. Reyes-Deloso, A.; Penieres-Carrillo, J. G.; Ríos-Guerra, H.; Lagunas-Rivera, S.; Galván-García, E. A.; Gómez-Balderas, R.; Ortega-Jiménez, F. Palladium-Catalyzed Suzuki−Miyaura cross-coupling reactions employing hydrazone-thioether ligands in aqueous media under IR-irradiation. J. Mol. Struct. 2023, 1294, 136562.
https://doi.org/10.1016/j.molstruc.2023.136562

[19]. Barefoot, R. R. Distribution and speciation of platinum group elements in environmental matrices. Trends Anal. Chem. 1999, 18, 702-707.
https://doi.org/10.1016/S0165-9936(99)00173-9

[20]. Ravindra, K.; Bencs, L.; Van Grieken, R. Platinum group elements in the environment and their health risk. Sci. Total Environ. 2004, 318, 1-43.
https://doi.org/10.1016/S0048-9697(03)00372-3

[21]. Rodrigues, J. P.; Santos-Echeandía, J.; Chaves-Pozo, E.; Campillo, J. A.; Rocha-Santos, T.; Duarte, A. C.; Rivera-Hernández, J. R.; Valdés, J.; Albentosa, M. Interactive effects of palladium (Pd) and microplastics (MPs) on metal bioaccumulation and biological responses in the Mediterranean mussel, Mytilus galloprovincialis. Mar. Pollut. Bull. 2023, 194, 115284.
https://doi.org/10.1016/j.marpolbul.2023.115284

[22]. Gennari, C.; Piarulli, U. Combinatorial Libraries of Chiral Ligands for Enantioselective Catalysis. Chem. Rev. 2003, 103 (8), 3071-3100.
https://doi.org/10.1021/cr020058r

[23]. Cozzi, P. G. Metal-Salen Schiff base complexes in catalysis: practical aspects. Chem. Soc. Rev. 2004, 33 (7), 410-421.
https://doi.org/10.1039/B307853C

[24]. Hossain, S. M.; Lakma, A.; Pradhan, R. N.; Chakraborty, A.; Biswas, A.; Singh, A. K. Synthesis and characterization of a novel, ditopic, reversible and highly selective, "Turn-On" fluorescent chemosensor for Al3+ion. RSC Adv. 2015, 5 (78), 63338-63344.
https://doi.org/10.1039/C5RA12040C

[25]. Makio, H.; Kashiwa, N.; Fujita, T. FI catalysts: A new family of high performance catalysts for olefin polymerization. Adv. Synth. Catal. 2002, 344, 477.
https://doi.org/10.1002/1615-4169(200207)344:5<477::AID-ADSC477>3.0.CO;2-6

[26]. Pasatoiu, T. D.; Sutter, J.; Madalan, A. M.; Fellah, F. Z.; Duhayon, C.; Andruh, M. Preparation, Crystal Structures, and Magnetic Features for a Series of Dinuclear [NiIILnIII] Schiff-Base Complexes: Evidence for Slow Relaxation of the Magnetization for the DyIII Derivative. Inorg. Chem. 2011, 50 (13), 5890-5898.
https://doi.org/10.1021/ic2004276

[27]. Pradhan, S.; Gurung, P.; Chettri, A.; Singha, U. K.; Chhetri, P.; Dutta, T.; Sinha, B. Synthesis of Novel [{(2-Amino-5-Nitro-N-[(E)-Thiophen-2-yl-Methylidene]Aniline-κ3N1:N4:S)(Sulphato-κ2O1:O3)}Zinc(II)] Complex with Physico-Chemical and Biological Perspective Exploration: A Combined Experimental and Computational Studies. J. Fluoresc. 2024, 35 (3), 1515-1528.
https://doi.org/10.1007/s10895-024-03612-0

[28]. Armarego, W. L. F.; Chai, C. Purification of laboratory chemicals; 6th ed.; Butterworth-Heinemann: Oxford, England, 2009.
https://doi.org/10.1016/B978-1-85617-567-8.50012-3

[29]. Becke, A. D. Density-functional thermochemistry. III. The role of exact exchange. J. Chem. Phys. 1993, 98 (7), 5648-5652.
https://doi.org/10.1063/1.464913

[30]. Ghosh, K.; Mridha, N. K.; Khan, A. A.; Baildya, N.; Dutta, T.; Biswas, K.; Ghosh, N. N. CO2 activation on transition metal decorated graphene quantum dots: An insight from first principles. Physica E 2022, 135, 114993.
https://doi.org/10.1016/j.physe.2021.114993

[31]. Baildya, N.; Mazumdar, S.; Mridha, N. K.; Chattopadhyay, A. P.; Khan, A. A.; Dutta, T.; Mandal, M.; Chowdhury, S. K.; Reza, R.; Ghosh, N. N. Comparative study of the efficiency of silicon carbide, boron nitride and carbon nanotube to deliver cancerous drug, azacitidine: A DFT study. Comput. Biol. Med. 2023, 154, 106593.
https://doi.org/10.1016/j.compbiomed.2023.106593

[32]. Dutta, T.; Maity, A.; Khan, A. A.; Ghosh, N. N. Activity of pure flavonoid-based green silver nano particles against breast cancer: A combined experimental and computational investigation. J. Mol. Struct. 2024, 1311, 138348.
https://doi.org/10.1016/j.molstruc.2024.138348

[33]. Dutta, T.; Ghosh, N. N.; Das, M.; Adhikary, R.; Mandal, V.; Chattopadhyay, A. P. Green synthesis of antibacterial and antifungal silver nanoparticles using Citrus limetta peel extract: Experimental and theoretical studies. J. Environ. Chem. Eng. 2020, 8 (4), 104019.
https://doi.org/10.1016/j.jece.2020.104019

[34]. Hassan, A. U.; Sumrra, S. H.; Zafar, M. N.; Nazar, M. F.; Mughal, E. U.; Zafar, M. N.; Iqbal, M. New organosulfur metallic compounds as potent drugs: synthesis, molecular modeling, spectral, antimicrobial, drug likeness and DFT analysis. Mol. Divers. 2021, 26 (1), 51-72.
https://doi.org/10.1007/s11030-020-10157-4

[35]. Hsu, K.; Chen, Y.; Lin, S.; Yang, J. iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis. BMC Bioinformatics 2011, 12 (S1), https://doi.org/10.1186/1471-2105-12-S1-S33.
https://doi.org/10.1186/1471-2105-12-S1-S33

[36]. Mishra, D. K.; Singha, U. K.; Das, A.; Dutta, S.; Kar, P.; Chakraborty, A.; Sen, A.; Sinha, B. DNA Binding, amelioration of oxidative stress, and molecular docking study of Zn(II) metal complex of a new Schiff base ligand. J. Coord. Chem. 2018, 71 (14), 2165-2182.
https://doi.org/10.1080/00958972.2018.1476687

[37]. Abdallah, S. M.; Mohamed, G. G.; Zayed, M.; El-Ela, M. S. Spectroscopic study of molecular structures of novel Schiff base derived from o-phthaldehyde and 2-aminophenol and its coordination compounds together with their biological activity. Spectrochim. Acta A 2009, 73 (5), 833-840.
https://doi.org/10.1016/j.saa.2009.04.005

[38]. Ghosh, R. D.; Das, S.; Ganguly, A.; Banerjee, K.; Chakraborty, P.; Sarkar, A.; Chatterjee, M.; Nanda, A.; Pradhan, K.; Choudhuri, S. K. An in vitro and in vivo study of a novel zinc complex, zinc N-(2-hydroxy acetophenone)glycinate to overcome multidrug resistance in cancer. Dalton Trans. 2011, 40 (41), 10873.
https://doi.org/10.1039/c1dt10501a

[39]. Kianfar, A. H.; Farrokhpour, H.; Dehghani, P.; Khavasi, H. R. Experimental and theoretical spectroscopic study and structural determination of nickel(II) tridentate Schiff base complexes. Spectrochim. Acta A 2015, 150, 220-229.
https://doi.org/10.1016/j.saa.2015.05.084

[40]. Abu-Surrah, A. S.; Thewalt, U.; Rieger, B. Chiral palladium(II) complexes bearing tetradentate nitrogen ligands: synthesis, crystal structure and reactivity towards the polymerization of norbornene. J. Organomet. Chem. 1999, 587, 58-66.
https://doi.org/10.1016/S0022-328X(99)00273-9

[41]. Emara, A. A.; Saleh, A. A.; Adly, O. M. Spectroscopic investigations of new binuclear transition metal complexes of Schiff bases derived from 4,6-diacetylresorcinol and 3-amino-1-propanol or 1,3-diamino-propane. Spectrochim. Acta A 2007, 68 (3), 592-604.
https://doi.org/10.1016/j.saa.2006.12.034

[42]. Kargar, H.; Torabi, V.; Akbari, A.; Behjatmanesh-Ardakani, R.; Sahraei, A.; Tahir, M. N. Pd(II) and Ni(II) complexes containing an asymmetric Schiff base ligand: Synthesis, x-ray crystal structure, spectroscopic investigations and computational studies. J. Mol. Struct. 2020, 1205, 127642.
https://doi.org/10.1016/j.molstruc.2019.127642

[43]. Odabaşoğlu, M.; Arslan, F.; Ölmez, H.; Büyükgüngör, O. Synthesis, crystal structures and spectral characterization of trans-bisaquabis(o-vanillinato)copper(II), cis-aquabis(o-vanillinato)copper(II) and aqua[bis(o-vanillinato)-1,2-ethylenediimin]copper(II). Dyes Pigm. 2007, 75 (3), 507-515.
https://doi.org/10.1016/j.dyepig.2006.06.033

[44]. Paul, M. K.; Dilipkumar Singh, Y.; Bedamani Singh, N.; Sarkar, U. Emissive bis-salicylaldiminato Schiff base ligands and their zinc(II) complexes: Synthesis, photophysical properties, mesomorphism and DFT studies. J. Mol. Struct. 2015, 1081, 316-328.
https://doi.org/10.1016/j.molstruc.2014.10.031

[45]. Fujimoto, A.; Inuzuka, K. Electronic properties and ultraviolet absorption and fluorescence spectra of 2,6-pyridinediamine. Spectrochim. Acta A 1988, 44, 1035-1043.
https://doi.org/10.1016/0584-8539(88)80225-3

[46]. Martin, L. Y.; DeHayes, L. J.; Zompa, L. J.; Busch, D. H. Relationship between metal-donor distance and ring size in macrocyclic complexes. J. Am. Chem. Soc. 1974, 96 (12), 4046-4048.
https://doi.org/10.1021/ja00819a071

[47]. Alcock, N. W.; Balakrishnan, K. P.; Berry, A.; Moore, P.; Reader, C. J. Studies of pendant arm macrocyclic ligands. Part 6. Synthesis of two penta-aza macrocyclic ligands containing single pendant co-ordinating 2-pyridylmethyl and 1-pyrazolylmethyl arms, and characterisation of their nickel(II), copper(II), cobalt(II), and zinc(II) complexes. Crystal structure of {3,11-dibenzyl-7-(2′-pyridylmethyl)-3,7,11,17-tetra-azabicyclo[11.3.1]-heptadeca-1(17),13,15-triene}zinc(II) perchlorate. J. Chem. Soc., Dalton Trans. 1988, 1089-1093.
https://doi.org/10.1039/DT9880001089

[48]. Wang, K.; Ye, Z.; Li, E.; Shi, L. Recent advances in palladium-catalysed organic synthesis using water as solvent. Chin. Chem. Lett. 2026, 37 (9), 112203.
https://doi.org/10.1016/j.cclet.2025.112203

[49]. Chakraborty, S.; Saha, S.; Bhattacharya, M. Synthesized green silver nano particles of Herpetospermumdarjeelingense shows enhanced In vitro Antimicrobial, Antioxidant and Hepatoprotective activity. Res. J. Pharmacog. Phytochem. 2023, 281-287.
https://doi.org/10.52711/0975-4385.2023.00044

Supporting Agencies

Departmental Special Assistance Scheme under the University Grants Commission, New Delhi (SAP-DRS-III, No. 540/12/DRS/2013), India.
Most read articles by the same author(s)
TrendMD

Dimensions - Altmetric - scite_ - PlumX

Downloads and views

Downloads

Download data is not yet available.

Metrics

Metrics Loading ...
License Terms
Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

License Terms

by-nc

Copyright © 2026 by Authors. This work is published and licensed by Atlanta Publishing House LLC, Atlanta, GA, USA. The full terms of this license are available at https://www.eurjchem.com/index.php/eurjchem/terms and incorporate the Creative Commons Attribution-Non Commercial (CC BY NC) (International, v4.0) License (http://creativecommons.org/licenses/by-nc/4.0). By accessing the work, you hereby accept the Terms. This is an open access article distributed under the terms and conditions of the CC BY NC License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited without any further permission from Atlanta Publishing House LLC (European Journal of Chemistry). No use, distribution, or reproduction is permitted which does not comply with these terms. Permissions for commercial use of this work beyond the scope of the License (https://www.eurjchem.com/index.php/eurjchem/terms) are administered by Atlanta Publishing House LLC (European Journal of Chemistry).