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In silico evaluation and docking studies of pyrazole analogs as potential autophagy modulators against pancreatic cancer cell line MIA PaCa-2
Hiba Hashim Mahgoub Mohamed (1,*) , Amna Bint Wahab Elrashid Mohammed Hussien (2) , Ahmed Elsadig Mohammed Saeed (3)
(1) Department of Chemistry, College of Science, Sudan University of Science and Technology, 2288, Khartoum, Sudan
(2) College of Animal Production Science and Technology, Sudan University of Science and Technology, 2288, Khartoum, Sudan
(3) Department of Chemistry, College of Science, Sudan University of Science and Technology, 2288, Khartoum, Sudan
(*) Corresponding Author
Received: 28 Feb 2020 | Revised: 27 May 2020 | Accepted: 17 Jun 2020 | Published: 30 Sep 2020 | Issue Date: September 2020
A quantitative structure activity relationship (QSAR) model for a series of N-(1-benzyl-3,5-dimethyl-1H-pyrazole-4-yl) benzamide derivatives having autophagy inhibitory activities as potent anticancer agents was developed by the multiple linear regressions (MLR) method. In this study, previous compounds were used in the model development were divided into a set of fifteen compounds as training set and set of four compounds as test set. A model with high prediction ability and high correlation coefficients was obtained. This model showed r = 0.968, r2 = 0.937 and Q2 = 0.880, the QSAR model was also employed to predict the experimental compounds in an external test set, and to predict the activity of a new designed set of 3,5-dimethyl-4-substituted-pyrazole derivatives (1-15), result showed that compound 3 has the most promising inhibition activity (EC50 = 0.869 μM) against human pancreatic ductal adenocarcinoma cell MIA PaCa-2 compared to the reference chloroquine with (EC50 = 14 μM). Thus, the model showed good correlative and predictive ability. Docking studies was performed for designed compounds, docking analysis showed the best compound 1 with high docking affinity of -24.8616 kcal/mol.
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. Levine, B.; Kroemer, G. Cell 2008, 132(1), 27-42.
. Glick, D.; Barth, S.; Macleod, K. F. J. Pathol. 2010, 221(1), 3-12.
. Shintani, T.; Klionsky, D. J. Science 2004, 306(5698), 990-995.
. Li, W. W.; Li, J.; Bao, J. K. Cell. Mol. Life Sci 2012, 69(7), 1125-1136.
. Arias, E.; Cuervo, A. M. Curr. Opin. Cell Biol. 2011, 23(2), 184-189.
. Mizushima, N.; Komatsu, M. Cell 2011, 147, 728-741.
. Badadani, M. ISRN Cell Biology 2012, 2012, 1-11.
. Kaur, J.; Debnath, J. Nat. Rev. Mol. Cell Biol. 2015, 16(8), 461-472.
. Yu, L.; Chen, Y.; Tooze, S. A. Autophagy 2018, 14(2), 207-215.
. Kimmelman, A. C. Gene Dev. 2011, 25(19), 1999-2010.
. Yang, X.; Yu, D. D.; Yan, F.; Jing, Y. Y.; Han, Z. P.; Sun, K.; Liang, L.; Hou, J.; Wei, L. X. Cell Biosci. 2015, 5(1), 14.
. Gracio, D.; Magro, F.; Lima, R. T.; Maximo, V. Hematol. Med. Oncol. 2017, 2(1), 1-4.
. Marinkovic, M.; Sprung, M.; Buljubasic, M.; Novak, I. Oxid. Med. Cell Longev. 2018, 2018, 1-18.
. Hernandez, N.; Kiralj, R.; Ferreira, M. M.; Talavera, I. Chemometr. Intell. Lab. 2009, 98(1), 65-77.
. Hasegawa, K.; Yokoo, N.; Watanabe, K.; Hirata, M.; Miyashita, Y.; Sasaki, S. Chemometr. Intell. Lab. 1996, 33, 63-69.
. Soni, H. M.; Patel, P. K.; Chhabria, M. T.; Rana, D. N.; Mahajan, B. M.; Brahmkshatriya, P. S. Comp. Chem. 2015, 3, 45-53.
. Duchowicz, P. R.; Fioressi, S. E.; Castro, E.; Wróbel, K.; Ibezim, N. E.; Bacelo, D. E. ChemistrySelect 2017, 2(13), 3725-3731.
. Roy, K.; Kar, S.; Das, R. N. Statistical methods in QSAR/QSPR. In A primer on QSAR/QSPR modeling, Springer, Cham, 2015.
. Tong, W.; Xie, Q.; Hong, H.; Shi, L.; Fang, H.; Perkins, R. Environ. Health Persp. 2004, 112(12), 1249-1254.
. Veerasamy, R.; Rajak, H.; Jain, A.; Sivadasan, S.; Varghese, C. P.; Agrawal, R. K. Int. J. Drug Des. Discov. 2011, 3, 511-519.
. Golbraikh, A.; Tropsha, A. ACS Sym. Ser. 2002, 16, 357-396.
. Ai, T.; Willett, R.; Williams, J.; Ding, R.; Wilson, D. J.; Xie, J.; Kim, D. H.; Puertollano, R.; Chen, L. ACS Med. Chem. Lett 2016, 8(1), 90-95.
. Mauri, A.; Consonni, V.; Pavan, M.; Todeschini, R. MATCH Commun. Math. Comput. Chem. 2006, 56(2), 237-248.
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DOI Link: https://doi.org/10.5155/eurjchem.11.3.187-193.1976
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