European Journal of Chemistry

Phytochemical profiling, antimicrobial activity and molecular docking of Dhanwantharam Gulika and Krimisodhini Gulika

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Mohamed Ahadu Shareef
Mohamed Zubair
Irfan Navabshan
Mohamed Divan Masood

Abstract

GC–MS analysis revealed three chromatographic peaks in Dhanwantharam Gulika and eighteen in Krimisodhini Gulika. These yielded three and eighteen best-supported tentative assignments, respectively, together with up to nine and fifty-four total library candidates when alternative spectral matches were included. Dhanwantharam Gulika was predominantly characterised by monoterpenoid/borneol derivatives, which accounted for approximately 93.17% of the total peak area, whereas Krimisodhini Gulika exhibited a diverse phytochemical profile comprising terpenoids, long-chain fatty acids, phenyl propanoids, lactones, esters, and nitrogen-containing compounds, with n-hexadecanoic acid representing 38.18% of the peak area. Both formulations exhibited appreciable antimicrobial activity against the tested microorganisms. Molecular docking against gastric lipase produced a best Glide XP docking score of −4.074 kcal/mol, while the most favourable MM-GBSA binding free energy reached −31.57 kcal/mol among the screened constituents. These computational results indicate moderate predicted ligand–protein interactions and should be considered preliminary, requiring experimental validation.


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Shareef, M. A.; Zubair, M.; Navabshan, I.; Masood, M. D. Phytochemical Profiling, Antimicrobial Activity and Molecular Docking of Dhanwantharam Gulika and Krimisodhini Gulika. Eur. J. Chem. 2026, 17, 244-257.

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References

[1]. India Ayurvedic Pharmacopoeia Committee The Ayurvedic Formulary of India: Veterinary; Controller of Publications, 2003. ISBN: 978-81-901151-4-8.

[2]. Nishteswar, K.; Vidyanath, R., Sahasrayogam: A Popular Book on Keraliya Tradition of Ayurvedic Treatment; Chowkhamba Sanskrit Series Office: Varanasi, India, 2007. ISBN: 978-81-7080-172-6.

[3]. Atanasov, A. G.; Zotchev, S. B.; Dirsch, V. M.; Orhan, I. E.; Banach, M.; Rollinger, J. M.; Barreca, D.; Weckwerth, W.; Bauer, R.; Bayer, E. A.; Majeed, M.; Bishayee, A.; Bochkov, V.; Bonn, G. K.; Braidy, N.; Bucar, F.; Cifuentes, A.; D'Onofrio, G.; Bodkin, M.; Diederich, M.; Dinkova-Kostova, A. T.; Efferth, T.; El Bairi, K.; Arkells, N.; Fan, T.; Fiebich, B. L.; Freissmuth, M.; Georgiev, M. I.; Gibbons, S.; Godfrey, K. M.; Gruber, C. W.; Heer, J.; Huber, L. A.; Ibanez, E.; Kijjoa, A.; Kiss, A. K.; Lu, A.; Macias, F. A.; Miller, M. J.; Mocan, A.; Müller, R.; Nicoletti, F.; Perry, G.; Pittalà, V.; Rastrelli, L.; Ristow, M.; Russo, G. L.; Silva, A. S.; Schuster, D.; Sheridan, H.; Skalicka-Woźniak, K.; Skaltsounis, L.; Sobarzo-Sánchez, E.; Bredt, D. S.; Stuppner, H.; Sureda, A.; Tzvetkov, N. T.; Vacca, R. A.; Aggarwal, B. B.; Battino, M.; Giampieri, F.; Wink, M.; Wolfender, J.; Xiao, J.; Yeung, A. W.; Lizard, G.; Popp, M. A.; Heinrich, M.; Berindan-Neagoe, I.; Stadler, M.; Daglia, M.; Verpoorte, R.; Supuran, C. T. Natural products in drug discovery: advances and opportunities. Nat Rev Drug Discov 2021, 20 (3), 200-216.
https://doi.org/10.1038/s41573-020-00114-z

[4]. Yuan, H.; Ma, Q.; Ye, L.; Piao, G. The Traditional Medicine and Modern Medicine from Natural Products. Molecules 2016, 21 (5), 559.
https://doi.org/10.3390/molecules21050559

[5]. Muyumba, N.; Mutombo, S.; Sheridan, H.; Nachtergael, A.; Duez, P. Quality control of herbal drugs and preparations: The methods of analysis, their relevance and applications. Talanta Open 2021, 4, 100070.
https://doi.org/10.1016/j.talo.2021.100070

[6]. Efferth, T.; Koch, E. Complex Interactions between Phytochemicals. The Multi-Target Therapeutic Concept of Phytotherapy. Curr. Drug Targets CDT. 2011, 12 (1), 122-132.
https://doi.org/10.2174/138945011793591626

[7]. Cos, P.; Vlietinck, A. J.; Berghe, D. V.; Maes, L. Anti-infective potential of natural products: How to develop a stronger in vitro 'proof-of-concept'. J. Ethnopharmacol. 2006, 106 (3), 290-302.
https://doi.org/10.1016/j.jep.2006.04.003

[8]. Kitchen, D. B.; Decornez, H.; Furr, J. R.; Bajorath, J. Docking and scoring in virtual screening for drug discovery: methods and applications. Nat Rev Drug Discov 2004, 3 (11), 935-949.
https://doi.org/10.1038/nrd1549

[9]. Stuart, B. H. Infrared spectroscopy fundamentals and applications; Wiley: New Delhi, India, 2004. ISBN: 978-0-470-85427-3.

[10]. Crouch, S.; Skoog, D.; Holler, F. Principles of Instrumental Analysis; 7th ed.; CENGAGE Learning Custom Publishing: Mason, OH, 2017. ISBN: 978-1-337-67007-4.

[11]. Silverstein, R. M.; Webster, F. X.; Kiemle, D. J. The spectrometric identification of organic compounds; 7th ed.; John Wiley & Sons: Nashville, TN, 2005. ISBN: 978-0-471-39362-7.

[12]. Stein, S. Mass Spectral Reference Libraries: An Ever-Expanding Resource for Chemical Identification. Anal. Chem. 2012, 84 (17), 7274-7282.
https://doi.org/10.1021/ac301205z

[13]. Sparkman, O. D.; Penton, Z.; Kitson, F. G. Gas chromatography and mass spectrometry: A practical guide; 2nd ed.; Academic Press: San Diego, CA, 2011. ISBN: 978-0-12-373628-4.
https://doi.org/10.1016/B978-0-12-373628-4.00001-0

[14]. Cappuccino, J. G.; Sherman, N. Microbiology: A Laboratory Manual: International Edition; 9th ed.; Pearson: Upper Saddle River, NJ, 2010. ISBN 978-0-321-67387-9.

[15]. Bauer, A. W.; Kirby, W. M.; Sherris, J. C.; Turck, M. Antibiotic Susceptibility Testing by a Standardized Single Disk Method. Am. J. Clin. Pathol. 1966, 45 (4), 493-496.
https://doi.org/10.1093/ajcp/45.4_ts.493

[16]. Luque de Castro, M.; Priego-Capote, F. Soxhlet extraction: Past and present panacea. J. Chromatogr. A 2010, 1217 (16), 2383-2389.
https://doi.org/10.1016/j.chroma.2009.11.027

[17]. Matuschek, E.; Brown, D.; Kahlmeter, G. Development of the EUCAST disk diffusion antimicrobial susceptibility testing method and its implementation in routine microbiology laboratories. Clin. Microbiol. Infect. 2014, 20 (4), O255-O266.
https://doi.org/10.1111/1469-0691.12373

[18]. Roussel, A.; Canaan, S.; Egloff, M.; Rivière, M.; Dupuis, L.; Verger, R.; Cambillau, C. Crystal Structure of Human Gastric Lipase and Model of Lysosomal Acid Lipase, Two Lipolytic Enzymes of Medical Interest. J. Biol. Chem. 1999, 274 (24), 16995-17002.
https://doi.org/10.1074/jbc.274.24.16995

[19]. Madhavi Sastry, G.; Adzhigirey, M.; Day, T.; Annabhimoju, R.; Sherman, W. Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments. J. Comput Aided Mol Des 2013, 27 (3), 221-234.
https://doi.org/10.1007/s10822-013-9644-8

[20]. Olsson, M. H.; Søndergaard, C. R.; Rostkowski, M.; Jensen, J. H. PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions. J. Chem. Theory Comput. 2011, 7 (2), 525-537.
https://doi.org/10.1021/ct100578z

[21]. Lu, C.; Wu, C.; Ghoreishi, D.; Chen, W.; Wang, L.; Damm, W.; Ross, G. A.; Dahlgren, M. K.; Russell, E.; Von Bargen, C. D.; Abel, R.; Friesner, R. A.; Harder, E. D. OPLS4: Improving Force Field Accuracy on Challenging Regimes of Chemical Space. J. Chem. Theory Comput. 2021, 17 (7), 4291-4300.
https://doi.org/10.1021/acs.jctc.1c00302

[22]. Shelley, J. C.; Cholleti, A.; Frye, L. L.; Greenwood, J. R.; Timlin, M. R.; Uchimaya, M. Epik: a software program for pKa prediction and protonation state generation for drug-like molecules. J. Comput Aided Mol Des 2007, 21 (12), 681-691.
https://doi.org/10.1007/s10822-007-9133-z

[23]. Halgren, T. A. Identifying and Characterizing Binding Sites and Assessing Druggability. J. Chem. Inf. Model. 2009, 49 (2), 377-389.
https://doi.org/10.1021/ci800324m

[24]. Friesner, R. A.; Banks, J. L.; Murphy, R. B.; Halgren, T. A.; Klicic, J. J.; Mainz, D. T.; Repasky, M. P.; Knoll, E. H.; Shelley, M.; Perry, J. K.; Shaw, D. E.; Francis, P.; Shenkin, P. S. Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy. J. Med. Chem. 2004, 47 (7), 1739-1749.
https://doi.org/10.1021/jm0306430

[25]. Friesner, R. A.; Murphy, R. B.; Repasky, M. P.; Frye, L. L.; Greenwood, J. R.; Halgren, T. A.; Sanschagrin, P. C.; Mainz, D. T. Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein−Ligand Complexes. J. Med. Chem. 2006, 49 (21), 6177-6196.
https://doi.org/10.1021/jm051256o

[26]. Genheden, S.; Ryde, U. The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities. Expert Opin. Drug Discov. 2015, 10 (5), 449-461.
https://doi.org/10.1517/17460441.2015.1032936

[27]. Lyne, P. D.; Lamb, M. L.; Saeh, J. C. Accurate Prediction of the Relative Potencies of Members of a Series of Kinase Inhibitors Using Molecular Docking and MM-GBSA Scoring. J. Med. Chem. 2006, 49 (16), 4805-4808.
https://doi.org/10.1021/jm060522a

[28]. Sumner, L. W.; Amberg, A.; Barrett, D.; Beale, M. H.; Beger, R.; Daykin, C. A.; Fan, T. W.; Fiehn, O.; Goodacre, R.; Griffin, J. L.; Hankemeier, T.; Hardy, N.; Harnly, J.; Higashi, R.; Kopka, J.; Lane, A. N.; Lindon, J. C.; Marriott, P.; Nicholls, A. W.; Reily, M. D.; Thaden, J. J.; Viant, M. R. Proposed minimum reporting standards for chemical analysis. Metabolomics 2007, 3 (3), 211-221.
https://doi.org/10.1007/s11306-007-0082-2

[29]. Kulkarni, M.; Sawant, N.; Kolapkar, A.; Huprikar, A.; Desai, N. Borneol: a Promising Monoterpenoid in Enhancing Drug Delivery Across Various Physiological Barriers. AAPS PharmSciTech 2021, 22 (4), https://doi.org/10.1208/s12249-021-01999-8.
https://doi.org/10.1208/s12249-021-01999-8

[30]. Hu, X.; Yan, Y.; Liu, W.; Liu, J.; Fan, T.; Deng, H.; Cai, Y. Advances and perspectives on pharmacological activities and mechanisms of the monoterpene borneol. Phytomedicine 2024, 132, 155848.
https://doi.org/10.1016/j.phymed.2024.155848

[31]. Desbois, A. P.; Smith, V. J. Antibacterial free fatty acids: activities, mechanisms of action and biotechnological potential. Appl Microbiol Biotechnol 2009, 85 (6), 1629-1642.
https://doi.org/10.1007/s00253-009-2355-3

[32]. den Hartigh, L. Conjugated Linoleic Acid Effects on Cancer, Obesity, and Atherosclerosis: A Review of Pre-Clinical and Human Trials with Current Perspectives. Nutrients 2019, 11 (2), 370.
https://doi.org/10.3390/nu11020370

[33]. Raut, J. S.; Karuppayil, S. M. A status review on the medicinal properties of essential oils. Ind. Crops Prod. 2014, 62, 250-264.
https://doi.org/10.1016/j.indcrop.2014.05.055

[34]. Gottlieb, H. E.; Kotlyar, V.; Nudelman, A. NMR Chemical Shifts of Common Laboratory Solvents as Trace Impurities. J. Org. Chem. 1997, 62 (21), 7512-7515.
https://doi.org/10.1021/jo971176v

[35]. Raut, J. S.; Shinde, R. B.; Chauhan, N. M.; Mohan Karuppayil, S. Terpenoids of plant origin inhibit morphogenesis, adhesion, and biofilm formation by Candida albicans. Biofouling 2012, 29 (1), 87-96.
https://doi.org/10.1080/08927014.2012.749398

[36]. Huang, S.; Grinter, S. Z.; Zou, X. Scoring functions and their evaluation methods for protein-ligand docking: recent advances and future directions. Phys. Chem. Chem. Phys. 2010, 12 (40), 12899.
https://doi.org/10.1039/c0cp00151a

[37]. Schrödinger, LLC. Schrödinger Release 2024-2: QikProp; Schrödinger, LLC: New York, NY, 2024.

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The New College (Autonomous), Affiliated to the University of Madras, Chennai, 600 014, Tamil Nadu, India.
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